Resistencia genética a la enfermedad de la cereza del café en variedades cultivadas en Colombia

Carlos Ernesto Maldonado Londoño; Lucía  Ángel Giraldo

doi:10.38141/10778/1121

Below you will find published research results on Colombian coffee growing:

Genetic resistance to coffee berry disease on coffee varieties cultivated in Colombia Resistencia genética a la enfermedad de la cereza del café en variedades cultivadas en Colombia

How to Cite

Maldonado Londoño, C. E., & Ángel Giraldo, L. . (2020). Genetic resistance to coffee berry disease on coffee varieties cultivated in Colombia. Cenicafe Journal, 71(1), 69-90. https://doi.org/10.38141/10778/1121

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Published: September 1, 2020

https://doi.org/10.38141/10778/1121

Keywords

Coffea arabica

Coffea canephora

Colletotrichum kahawe subsp

kahawae

genes de resistencia a enfermedades

marcadores moleculares

genómica comparativa

Coffea arabica

Coffea canephora

Colletotrichum kahawe subsp

kahawae

disease resistance genes

molecular markers

comparative genomics

Numero

Vol. 71 No. 1 (2020): Cenicafe Journal

Sectión

Articles

License terms (See)

This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.

Carlos Ernesto Maldonado Londoño

https://orcid.org/0000-0001-9433-6979

Lucía Ángel Giraldo

https://orcid.org/0000-0002-6403-4977

Summary

Coffee Berry disease (CDB), an anthracnose caused by the fungus Colletotrichum kahawae subsp. Kahawae, has been registered only in Africa and it can cause up to 80% of crop losses. Cenicafé works on the development of varieties resistant to the main coffee diseases, even in absence of the pathogens in Colombia; such studies use Timor Hybrid (HT) as the main source of resistance against coffee leaf rust (CLR) and CBD. The objective of this study was to screen the presence of the Ck-1 gene, resistant to CBD, on the main coffee varieties cultivated in Colombia in order to establish the correlation between the presence of Ck-1 and the response to hypocotyl inoculation, and to explore the genomic basis of the resistance. Molecular markers linked to Ck-1 were located at the Coffea canephora chromosome 1, a genomic region with fifteen disease resistance genes. Markers for Ck-1 were found in all the breeding lines derived from TH-1343 and absent in Typica, Bourbon, and Caturra varieties and in lines derived from TH-832/1. There was no correlation between the allelic forms of CBD resistance and the resistance of the genotype measured by the hypocotyl inoculation test. The high frequency of allelic forms associated with CDB resistance in materials selected mainly for CLR resistance suggests co-segregation of resistance genes for both diseases. The strategy of multi-line varieties developed by Cenicafé, which currently corresponds to 80% of the coffee planted in Colombia, protects the crop population against the eventual arrival of the pathogen in Colombia.

Author biography (See)

Carlos Ernesto Maldonado Londoño

Investigador Científico I. Disciplina de Mejoramiento Genético, Centro Nacional de Investigaciones de Café, Cenicafé. Manizales, Caldas, Colombia.

Lucía Ángel Giraldo

Asistente de Investigación. Disciplina de Mejoramiento Genético, Centro Nacional de Investigaciones de Café, Cenicafé. Manizales, Caldas, Colombia.

References (See)

Alworah, G. O., (2019, abril 27). Mummified berries due to CBD infection, Over 80% crop loss. https://nextgen.iupac2019.be/2019/02/26/development-and-promotionof-biological-control-approaches-for-management-ofcoffee-berry-disease/
Alkimim, E. R., Caixeta, E. T., Sousa, T. V., Pereira, A. A., Oliveira, A. C. B., Zambolim, L., & Sakiyama, N. S. (2017). Marker-assisted selection provides arabica coffee with genes from other Coffea species targeting on multiple resistance to rust and coffee berry disease. Molecular Breeding, 37(1), 6. https://doi.org/10.1007/s11032-016-0609-1
Alvarado, G., Posada, H. E., & Cortina, H. A. (2005a). Castillo®: Nueva variedad de café con resistencia a la roya. Avances Técnicos Cenicafé, 337, 1-8. http://hdl.handle.net/10778/401
Alvarado, G., Posada, H. E., Cortina, H. A., Duque, H., Baldión, J. V., & Guzmán, O. (2005b). La Variedad Castillo® Pueblo Bello para las regiones cafeteras de Magdalena, Cesar, La Guajira y Norte de Santander. Avances Técnicos Cenicafé, 341, 1-8. http://hdl.handle.net/10778/342
Alvarado, G., Posada, H. E., Cortina, H. A., Duque, H., Baldión, J. V., & Guzmán, O. (2005c). La Variedad Castillo® Santa Bárbara para las regiones cafeteras de Cundinamarca y Boyacá. Avances Técnicos Cenicafé, 342, 1-8. http://hdl.handle.net/10778/383
Alvarado, G., Posada, H. E., Cortina, H. A., Duque, H., Baldión, J. V., & Guzmán, O. (2005d) La Variedad Castillo® La Trinidad para las regiones cafeteras del Tolima. Avances Técnicos Cenicafé, 343, 1-8. http://hdl.handle.net/10778/348
Alvarado, G., Posada, H. E., Cortina, H. A., Duque, H., Baldión, J. V., & Guzmán, O. (2006a). La Variedad Castillo® Naranjal para las regiones cafeteras de Caldas, Quindío, Risaralda y Valle del Cauca. Avances Técnicos Cenicafé, 338, 1-8. http://hdl.handle.net/10778/413
Alvarado, G., Posada, H. E., Cortina, H. A., Duque, H., Baldión, J. V., & Guzmán, O. (2006b). La Variedad Castillo® Paraguaicito para las regiones cafeteras de Quindío, Risaralda y Valle del Cauca. Avances Técnicos Cenicafé, 339, 1-8. http://hdl.handle.net/10778/417
Alvarado A., G., Posada S., H. E., Cortina G., H. A., Duque O., H, Baldión R., J. V. & Guzmán M., O. (2006c). La Variedad Castillo® El Rosario para las regiones cafeteras de Antioquia, Risaralda y Caldas. Avances Técnicos Cenicafé, 340, 1-8. http://hdl.handle.net/10778/403
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., Harris, M. A., Hill, D. P., Issel-Tarver, L., Kasarskis, A., Lewis, S., Matese, J. C., Richardson, J. E., Ringwald, M., Rubin, G. M., & Sherlock, G. (2000). Gene ontology: tool for the unification of biology. Nature genetics, 25(1), 25-29. https://doi.org/10.1038/75556
Castillo Z., J., & Moreno R., L. G. (1988). La variedad Colombia: Selección de un material compuesto resistente a la roya del cafeto. Cenicafé.
Clarindo, W. R., Carvalho, C. R., Caixeta, E. T., & Koehler, A. D. (2013). Following the track of “Híbrido de Timor” origin by cytogenetic and flow cytometry approaches. Genetic Resources and Crop Evolution, 60(8), 2253-2259. https://doi.org/10.1007/s10722-013-9990-3
Cook, R. T. A., & Van der Vossen, H. A. M. (1972). Screening coffee plants for CBD resistance. Annual Report Coffee Research Foundation, Kenya, 73, 66-68.
Denoeud, F., Carretero-Paulet, L., Dereeper, A., Droc, G., Guyot, R., Pietrella, M., Zheng, C., Alberti, A., Anthony, F., Aprea, G., Aury, J.-M., Bento, P., Bernard, M., Bocs, S., Campa, C., Cenci, A., Combes, M.-C., Crouzillat, D., Da Silva, C., … Lashermes, P. (2014). The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science, 345(6201), 1181-1184. https://doi.org/10.1126/science.1255274
Flórez, C. P., Maldonado, C. E., Cortina, H. A., Moncada, M. P., Montoya, E. C., Ibarra, L. N., Unigarro, C. A., Rendón, J. R., & Duque, H. (2016). Cenicafé 1 nueva variedad de porte bajo, altamente productiva, resistente a la roya y al CBD, con mayor calidad física del grano. Avances Técnicos Cenicafé, 469, 1-8. http://hdl.handle.Net/10778/1114
Flórez, C. P., Arias, J. C., Maldonado, C. E., Cortina, H.A., Moncada, M. P., Quiroga, J., Molina, D. M., García, J. C., & Duque, H. (2018). Variedades Castillo® Zonales: resistencia a la roya con mayor productividad. Avances Técnicos Cenicafé, 489, 1-8. http://hdl.handle.net/10778/1115
The Gene Ontology Consortium. (2019). The gene ontology resource: 20 years and still GOing strong. Nucleic Acids Research, 47(D1), D330-D338. https://doi.org/10.1093/nar/gky1055
Gichimu, B. M., Gichuru, E. K., Mamati, G. E., & Nyende, A. B. (2014). Occurrence of Ck-1 gene conferring resistance to Coffee Berry Disease in Coffea arabica cv. Ruiru 11 and its parental genotypes. Journal of Agricultural and Crop Research, 2(3), 51-61.
Gichuru, E. K. (2007). Characterization of genetic resistance to Coffee Berry Disease (Colletotrichum kahawae Waller and Bridge) in Arabica coffee (Coffea arabica L.) that is introgressed from Coffea canephora Pierre. [Unpublished doctoral dissertation]. University of Nairobi.
Gichuru, E. K., Agwanda, C. O., Combes, M. C., Mutitu, E. W., Ngugi, E. C. K., Bertrand, B., & Lashermes, P. (2008). Identification of molecular markers linked to a gene conferring resistance to coffee berry disease (Colletotrichum kahawae) in Coffea arabica. Plant pathology, 57(6), 1117-1124. https://doi.org/10.1111/j.1365-3059.2008.01846.x
Griffiths, E., Gibbs, J. N., & Waller, J. M. (1971). Control of coffee berry disease. Annals of Applied Biology, 67(1), 45-74. https://doi.org/10.1111/j.1744-7348.1971.tb02907.x
Guzmán, F.A., & Moncada-Botero, M. (2012). Evaluación de marcadores SSR ligados a resistencia a Colletotrichum kahawae en Coffea arabica. Revista Cenicafé, 63(2), 7-22. http://hdl.handle.net/10778/532
Kilambo, D. L., Reuben, S. O., & Mamiro, D. (2013a). Races of Hemileia vastatrix and variation in pathogenicity of colletotrichum kahawae isolates to compact coffee genotypes in Tanzania. Journal of Plant Studies, 2(2), 95-104. http://www.suaire.suanet.ac.tz:8080/xmlui/handle/123456789/1304
Kilambo, D. L., Reuben, S. O., & Mamiro, D. P. (2013b). Responses of Compact Coffee Clones Against Coffee Berry and Coffee Leaf Rust Diseases in Tanzania. Journal of Plant Studies, 2(2), 81-94. http://www.suaire.suanet.ac.tz:8080/xmlui/handle/123456789/1422
Lashermes, P., Combes, M. C., Ribas, A., Cenci, A., Mahé, L., & Etienne, H. (2010). Genetic and physical mapping of the SH3 region that confers resistance to leaf rust in coffee tree (Coffea arabica L.). Tree Genetics & Genomes, 6(6), 973-980. https://doi.org/10.1007/s11295-010-0306-x
Moncada, M. D. P., Tovar, E., Montoya, J. C., González, A., Spindel, J., & McCouch, S. (2015). A genetic linkage map of coffee (Coffea arabica L.) and QTL for yield, plant height, and bean size. Tree Genetics & Genomes, 12(1), 1-17. https://doi.org/10.1007/s11295-015-0927-1
Mtenga, D.J., Kilambo, D.L., Teri, J.M., & Masumbuko, L. (2006, september 10-15). Progress in developing Coffee Berry Disease (Colletotrichum kahawae) resistant compact hybrid varieties (Coffea arabica) in Tanzania [Conference session]. 21st International Scientific Colloquium on Coffee, Montpellier, France. https://www.asic-cafe.org/conference/21st-internationalscientific-colloquium-coffee/progress-developingcoffee-berry-disease
Mugo, H. M., Irungu, L. W., & Ndegwa, P. N. (2012). The diseases of coffee under the changing climate: The established situation in Kenya. Journal of Agricultural Science and Technology, 2(2A), 265-267.
Omondi, C. O., Ayiecho, P. O., Mwang'ombe, A. W., & Hindorf, H. (2001). Resistance of Coffea arabica cv. Ruiru 11 tested with different isolates of Colletotrichum kahawae, the causal agent of coffee berry disease. Euphytica, 121(1), 19-24. https://doi.org/10.1023/A:1012056622969
Phiri, N. (2018). Colletotrichum kahawae. Centre for Agriculture and Bioscience International – CABI. https://www.plantwise.org/knowledgebank/datasheet/14916/
Posada, H. E., Alvarado, G., Cortina, H. A., Solarte, C. R., Duque, H., Baldión, J. V., & Guzmán, O. (2006). La Variedad Castillo® El Tambo: para las regiones cafeteras de Cauca, Nariño, Huila, Tolima y Valle del Cauca. Avances Técnicos Cenicafé, 344, 1-8. http://hdl.handle.net/10778/390
Schuler, G. D. (1997). Sequence mapping by electronic PCR. Genome Research, 7(5), 541-550. https://doi.org/10.1101/gr.7.5.541
Silva, M. D. C., Várzea, V., Guerra-Guimarães, L., Azinheira, H. G., Fernandez, D., Petitot, A. S., Bertrand, B., Lashermes, P., & Nicole, M. (2006). Coffee resistance to the main diseases: leaf rust and coffee berry disease. Brazilian Journal of Plant Physiology, 18(1), 119-147. https://doi.org/10.1590/S1677-04202006000100010
Teferi, D. (2014). Status of released Coffea arabica varities for their resistance to Colletotrichum kahawae (coffee berry disease) under laboratory condition. Discourse Journal of Agriculture and Food Sciences, 2(6), 197-202. http://www.resjournals.org/JAFS/PDF/2014/Jun/Teferi.pdf
Van der Graaff, N. A. (1981). Selection of arabica coffee types resistant to coffee berry disease in Ethiopia. [Unpublished doctoral dissertation]. Agricultural University of Wageningen.
Van Der Vossen, H. A. M. & Walyaro, D. J. (1980) Breeding for resistance to coffee berry disease in Coffea arabica L. II. Inheritance of resistance. Euphytica, 29(3), 777–791. https://doi.org/10.1007/BF00023225
Van Der Vossen, H. A. M., & Walyaro, D. J. (2009). Additional evidence for oligogenic inheritance of durable host resistance to coffee berry disease (Colletotrichum kahawae) in arabica coffee (Coffea arabica L.). Euphytica, 165(1), 105-111. https://doi.org/10.1007/s10681-008-9769-3
Van Der Vossen, H. A. M. & Waweru J. M. (1977). A temperature controlled inoculation room to increase efficiency of preselection for resistance to coffee berry disease. Kenya Coffee, 41, 164–167.
Vieira, A., Diniz, I., Loureiro, A., Pereira, A. P., Silva, M. C., Várzea, V., & Batista, D. (2019). Aggressiveness profiling of the coffee pathogen Colletotrichum kahawae. Plant pathology, 68(2), 358-368. https://doi.org/10.1111/ppa.12950
Yang, S., Zhang, X., Yue, J. X., Tian, D., & Chen, J. Q. (2008). Recent duplications dominate NBS-encoding gene expansion in two woody species. Molecular Genetics and Genomics, 280(3), 187-198. https://doi.org/10.1007/s00438-008-0355-0
Zhou, T., Wang, Y., Chen, J.Q., Araki, H., Jing, Z., Jiang, K., Shen, J., & Tian, D. (2004). Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes. Molecular Genetics and Genomics, 271(4), 402-415. https://doi.org/10.1007/s00438-004-0990-z